PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047835.80
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 656aa    MW: 71926.9 Da    PI: 7.3774
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047835.80genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-0785104525
                   --SGGGGTS--TTTTT-SS-S CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                   +C+ffa+ G+C  G++C+F H
  EcC047835.80  85 ICSFFAK-GWCIKGSSCRFLH 104
                   6******.************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.55880107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-680104IPR000571Zinc finger, CCCH-type
SMARTSM003560.006280106IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-585104IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010220Biological Processpositive regulation of vernalization response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MNDLLEVLSY LPLILNQLCR DSLPNKRLTV PDIYAAPCSE KDKQADLQPG DGMPLSSRLT  60
TSGARLRSLS PGLELPERNK RAAIICSFFA KGWCIKGSSC RFLHIKDNVK STPELVCRHG  120
TGSSCIEEAV HDEGRKDDFE KSKSPGLPKQ LASSVANNSA LCYGSSLEQI QSQVARENES  180
MHQINPIAIS RPLGVEDLLF SAPTDSHQLP PRKHHDGHMS ADVDNGRDFQ ERSWSADDYR  240
MHASKLSSGG SGSMRGYWLP PSSGSIRSFN LGQNKQPTSH ASITEDQVTN QGKFFGNSSP  300
VTSPALNSSV KYPSTTAILP SQHSSWLSGS SRILSSFSEF SNPLPAQSIL DVDYAGLRSA  360
SLLGSSSDLA GSYSGNLSRA NISADSRPRF GNRRTFSSYD WEPSEPFRPS FLITPTSISS  420
PGSKCDPFHD RIEQHKTRDE SFRLFSSQGA SVLNTAEQQV HSDSKRNLVE ERGNNSYSVS  480
SDHRFNEHGL GKGSYLHGKD VNGSAVETAE NSVVDSQNEN EMSKENDQLS DHAKDSSHIS  540
GSSMDLGSAL GSDVAGHKDK VRQDIEMDVT QKKAADVNQE SKALRHFRVA LIDYVKELLK  600
PAWQGGRLSK DAHNLIVKKA VNKVLTTLQP QQIPPNPESI KHFLSFSQFK LTRLVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057376.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1
TrEMBLA0A059C8J10.0A0A059C8J1_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156171016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-26C3H family protein